CHAIN Grant Publications

Manuscripts published:

Balkundi S, Nowacek AS, Veerubhotla RS, Chen H, Martinez-Skinner, A, Roy U, Mosley RL, Kanmogne G, Liu X, Kabanov, A.V, Bronich T, McMillan J, Gendelman HE. Comparative Manufacture and Cell-based Delivery of Antiretroviral Nanoformulations. Intl J Nanomedicine, 2011:6 1-12. PMCID: PMC3260033

Gorantla S and Gendelman HE. Can Humanized Mice Reflect the Complex Pathobiology of HIV-Associated Neurocognitive Disorders?  In press, J Neuroimmune Pharmacol, 2011. PMCID: PMC Journal – In Process

Gorantla S, Poluektova L, Gendelman, HE. Rodent Models for HIV-associated Neurocognitive Disorders.  In press, Trends in Neurosciences, 2011. PMCID: PMC Journal – in Process

Greving MP, Patti GJ, Siuzdak G. Nanostructure-Initiator Mass Spectrometry (NIMS) Metabolite Analysis and Imaging. Analytical Chemistry, 2011, 83(1), 2-7. PMCID: PMC3012143

Haverland N, Pottiez G, Wiederin J, and Ciborowski P.  Immunoreactivity of anti-gelsolin antibody: Implications for biomarker validation.  Journal of Translational Medicine, 2010, 8:137. PMCID: PMC3019187.

Kraft-Terry S, Rodriguez Y, Plaud M, Ciborowski P, Duan F, Pérez-Laspiur J, Wojna V, Gendelman HE and Meléndez L.  Proteomic analyses of monocytes obtained from Hispanic women with HIV-associated dementia show depressed antioxidants", Proteomics - Clinical Applications, 2010, 4:706-714. PMCID: PMC3098323.

Kraft-Terry SD, Engebretsen IL, Bastola DK, Fox HS, Ciborowski P, and Gendelman HE. Pulsed stable isotope labeling of amino acids in cell culture demonstrate dynamic interactions between HIV-1 and the monocyte-derived macrophage.  J. Proteome Res. 2011, 3:2852-2862. PMCID: PMC3108467.

Kraft-Terry S, Engebretsen, I.L., Bastola, D.K., Fox, H.S., Ciborowski, P., Gendelman, H .E. Pulsed Stable Isotope Labeling of Amino Acids in Cell Culture Uncovers the Dynamic Interactions between HIV-1 and the Monocyte-Derived Macrophage. J Proteome Res. 2011 June 3;10(6):2852-2862. Published online 2011 April 18. PMCID:PMC3108467

Liu X-M, Quan L-d, Tian J, Laquer FC, Ciborowski P and Wang D.  The Syntheses of Click PEG – Dexamethasone Conjugates for the Treatment of Rheumatoid Arthritis.  Biomacromolecules, 2010, 11:2621-2628. PMCID: PMC2966310.

Long JZ, Cisar JS, Miliken D, Niessen S, Wang C, Trauger SA, Siuzdak G, Cravatt B.F. Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids Nature Chemical Biology, 7:763-5, 2011. PMCID: PMC3201731

Patti GJ, Tautenhahn R, Fonslow BR, Cho Y, Deutschbauer A, Arkin A, Northen T, Siuzdak G. Meta-Analysis of Global Metabolomics and Proteomics Data to Link Alterations with Phenotype. Spectroscopy, in press (cover article), 2012.

Patti GJ, Tautenhahn R, Siuzdak G. Meta-Analysis of Untargeted Metabolomic Data from Multiple Profiling Experiments Nature Protocols, in press, 2012.PMC Journal-in Process

Patti GJ, Yanes O, Shriver L, Courade J-P, Tautenhahn R, Manchester M, Siuzdak G. Metabolomics Implicates Altered Sphingolipid Metabolites… of Neuropathic Origin Nature Chemical Biology, in press, 2012.    PMC Journal-in Process

Patti GJ, Yanes O, Siuzdak G. Metabolomics: leading from behind Nature Reviews, in press, 2012.  PMC Journal-in Process

Pottiez G and Ciborowski P. Elucidating protein inter- and intramolecular interacting domains using chemical cross-linking and matrix-assisted laser desorption ionization-time of flight/time of flight mass spectrometry. Anal Biochem – 2012. 421(2):712-8. PMCID:  PMC3287059

Pottiez G, Haverland N and Ciborowski P.  Mass spectrometric characterization of gelsolin isoforms. Rapid Communications in Mass Spectrometry, 2010, 24:2620-2624. PMCID:    PMC3286873

Pottiez G, Jagadish T, Yu F, Letendre S, Ellis R, Duarte NA, Grant I, Gendelman HE, Fox HS and Ciborowski P. Plasma Proteomic Profiling in HIV-1 Infected Methamphetamine Abusers. PLoS One. 7(2):e31031 PMCID: PMC3281056

Swanson P, Kassmeier M, Mondal K, Palmer V, Raval P, Kumar S, Perry G, Anderson D, Ciborowski P, Jackson S, and Xiong Y. "VprBP binds full-length RAG1 and is required for B cell development and V(D)J recombination fidelity" EMBOJ, 2011 31(4):945-58. PMCID:  PMC3280554

Tautenhahn R, Patti GJ, Kalisiak E, Miyamoto T, Schmidt M, Fan YL, McBee J, Baliga NS, Siuzdak G. metaXCMS: Second-Order Analysis of Untargeted Metabolomics Data. Analytical Chemistry, 2011, 83, 696-700. PMC Journal-in Process

Wiederin J, Donahoe D, Anderson J, Yu F, Fox HS, Ciborowski P and Gendelman HE. Changes in the Plasma Proteome Follows Chronic Opiate Administration In Simian Immunodeficiency Virus Infected Rhesus Macaques. Drug and Alcohol Dependence, 2011, Aug 5. [Epub ahead of print], *- corresponding author. PMCID: PMC3245805

Wiederin J, Donahoe R, Anderson J, Yu F, Fox HS, Gendelman HE, and Ciborowski P.  Plasma Proteomic Fingerprinting Reflects Simian Immunodeficiency Virus Infection in Rhesus Macaques. J. Proteome Res., 2010, 9:4721-4731. PMCID: PMC3285256

Yanes O, Tautenhahn R, Patti G, Siuzdak G. Expanding Coverage of the Metabolome for Global Metabolite Profiling Analytical Chemistry, 2011, 83, 2152-2161.  PMCID:  PMC3285547

Zhang J, Liu J, Katafiasz B, Fox HS, Xiong H.  HIV-1 gp120-Induced axonal Injury detected by accumulation of β-amyloid precursor protein in adult rat corpus callosum.  J. Neuroimmune Pharmacol  6(4):650-7, 2011. PMCID: PMC3165079

Book chapters:

Ciborowski P and Silberring J. Co-editors.  The cross-roads of proteomics and analytical chemistry.  Elsevier, Inc. – signed contract

Pottiez G and Ciborowski P.  Proteomic Profiling of Cerebrospinal Fluid. In: Expression Profiling in Neuroscience. (Y. Karamanos, ed.) Humana Press, Inc. 2010 – invited contributor.

Haverland N, and Ciborowski P.  Protein Profiling of the Brain: Proteomics of Isolated Tissues and Cells. In: Expression Profiling in Neuroscience. (Y. Karamanos, ed.) Humana press, Inc. 2010 – invited contributor.

Wojtkiewicz M and Ciborowski P.  Profiling of HIV proteins in Cerebrospinal Fluid.  In: Expression Profiling in Neuroscience. (Y. Karamanos, ed.) Humana press, Inc. 2010 – invited contributor.

Pottiez G, Wiederin J and Ciborowski P.  Metabolomics and Proteomics In: NeuroAIDS and Proteomics and neuroAIDS diagnostics.  In: The Neurology of AIDS, 3rd. ed, (HE Gendelman and T. Ikezu, eds.), Springer, Inc. 2010.

Wojtkiewich M, Barnett K and Ciborowski P. Protein identification by mass spectrometry: Proteomics. In: Current Laboratory Methods in Neuroscience Research.  H. Xiong and HE. Gendelman, Eds.  Springer, 2012.