Experiments which have used the Rhesus Macaque Genome Array (Genechip)

 

Validation | Evolution | Infectious Diseases | Stem cells | Reproduction | Neuroscience | Aging | Transplantation | RNA helicase A

 

Validation

GSE7094 Expression data from 5 rhesus tissues at 3 centers

GSE9531 Rhesus Macaque gene expression data obtained using Rhesus Macaque Array or Human Genome U133 Plus 2.0 Array

 

Evolution

GSE33010 Human-specific patterns of gene expression in the brain (Arrays)

GSE33588 Human-specific patterns of gene expression in the brain

 

Infectious Diseases

SIV/HIV | SARS | Monkeypox | A(H1N1)pdm09 | Streptococcus

 

SIV/HIV

GSE37311 Gene expression profiling of rhesus macaques vaccinated with ALVAC-SIVgpe DNA + SIVgp120 protein subunit and unvaccinated controls after challenge with SIVmac251 - 3 wks post-infection

GSE37312 Gene expression profiling of rhesus macaques vaccinated with ALVAC-SIVgpe DNA + SIVgp120 protein subunit and unvaccinated controls after challenge with SIVmac251 - 11 wks post-infection

GSE37320 Gene expression profiling of rhesus macaques vaccinated with ALVAC-SIVgpe DNA + SIVgp120 protein subunit and unvaccinated controls after challenge with SIVmac251

GSE37834 Transcriptional profiling of experimental CD8+ lymphocyte depletion in rhesus macaques infected with SIVmac239

GSE7157 Infection of Macaques with SIVmac251 in vivo

GSE14351 Oral mucosal response to SIV infection

GSE51436 Expression data from rhesus macaque tongue

GSE51438 Expression data from rhesus macaque tongue epithelium

GSE51445 Transcription profiling reveals potential mechanisms of dysbiosis in the oral microbiome of rhesus macaques with chronic untreated SIV infection

GSE51615 Expression data from rhesus macaque colon, jejunum, and lung

GSE10567 Rhesus macaque ileal loop study

GSE34300 Focused examination of the intestinal lamina propria yields greater molecular insight into mechanisms underlying SIV induced immune dysfunction

GSE29980 Colorectal tissue gene expression in SIV negative and SIV positive Rhesus macaques and sooty mangabeys

GSE14482 Differentially expressed genes in subpopulations of monocytes from non infected animals.

GSE23722 Rapid SIV Env-specific mucosal and serum antibody induction augments cellular immunity in protecting immunized, elite-controller macaques against high dose heterologous SIV challenge

GSE33251 Multiple changes at the mucosal surface are induced by protective SIV vaccination

GSE33933 Gene expression in the blood of SIV infected Rhesus macaques following in vivo PD-1 blockade

GSE24343 Differential pulmonary gene expression in a nonhuman primate model of HIV-related COPD

GSE16147 Microarray Expression Analysis of SIV infection of Sooty Mangabeys

GSE17626 Lymphatic Tissues of Sooty Mangabeys and Rhesus Macaques in Early SIV Infection

GSE35460 Gene expression profiling data from sooty mangabeys treated with interferon alpha

Journal of Medical Primatology - CCR5 blockade is well tolerated and induces changes in the tissue distribution of CCR5+ and CD25+ T cells in healthy, SIV-uninfected rhesus macaques

GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

 

SARS

GSE23955 Comparative Pathogenesis of Three Human and Zoonotic SARS-CoV Strains in Cynomolgus Macaques

PLoS Pathogens - Exacerbated Innate Host Response to SARS-CoV in Aged Non-Human Primates

 

Monkeypox

GSE21001 Infection of MK2 cells with monkeypox virus


pandemic A(H1N1)2009 virus

Veterniary Pathology - Pandemic 2009 H1N1 Influenza Virus Causes Diffuse Alveolar Damage in Cynomolgus Macaques

Streptococcus

GSE39029 Choriodecidual Infection Downregulates Angiogenesis and Morphogenesis Pathways in Fetal Lungs from Macaca Nemestrina


Stem Cell Biology

PLoS One - Transcriptional differences between rhesus embryonic stem cells generated from in vitro and in vivo derived embryos

GSE4446 Transcriptional profiling of rhesus monkey embryonic stem cells

GSE7534 Pedigreed Primate Embryonic Stem Cells Express Homogeneous Familial Gene Profiles

GSE7748 Transcriptional profiling of rhesus monkey nuclear transfer embryonic stem cells

GSE13146 Generation of Induced Pluripotent Stem Cells from Adult Rhesus Monkey Fibroblasts

GSE16168 Expression Profile of Embryonic Stem Cell Derived Serotonin Neurons

GSE17964 Discovery of novel imprinted genes by transcriptional analysis of parthenogenetic embryonic stem cells

GSE18639 Pluripotency Genes Overexpressed in Primate Embryonic Stem Cells Are Localized on Homologues of Human 16, 17, 19 and X

GSE19964 Factors from human embryonic stem cell-derived fibroblast-like cells promote topology-dependent hepatic differentiation in primate embryonic stem cells and human induced pluripotent stem cells

GSE25198 RNA profiles of embryonic stem cells generated from in vitro produced or in vivo derived rhesus preimplantation embryos

GSE36252 X-chromosome inactivation in monkey embryos and pluripotent stem cells

Reproductive Biology

GSE38387 Rhesus monkey cumulus cells revert to a mural granulosa cell state following an ovulatory stimulus

GSE10367 Gene expression data throughout the normal lifespan of rhesus macaque corpora lutea during natural menstrual cycles

GSE29363 Effects of steroid ablation on the luteal transcriptome during simulated early pregnancy in rhesus macaques

GSE8371 Effect of LH replacement on luteal transcriptome following CET-induced luteolysis

GSE7827 Identification of luteinizing hormone regulated genes in the primate corpus luteum

GSE7971 Expression profiling of primate CL following PGF2alpha treatment

GSE11895 Effects of in vitro maturation on oocyte gene expression

GSE12281 The effects of LH ablation/replacement versus steroid ablation/replacement on gene expression in primate corpora lutea

GSE12807 Gene expression data throughout spontaneous functional regression of the rhesus macaque corpus luteum.

GSE14518 Endometrial profile of low-dose estradiol and tamoxifen combination therapy

GSE22776 Dynamics of the Transcriptome in the Primate Ovulatory Follicle

GSE25288 Extensive effects of in vitro oocyte maturation on rhesus monkey cumulus cell transcriptome

GSE25335 Microarray analysis of the transcriptome in the primate corpus luteum during chorionic gonadotropin administration simulating early pregnancy.

GSE27228
WFUBMC Primate Center X-96-23: Cynomolgus macaque response to hormone replacement therapy


Neuroscience

PNAS Central amygdala nucleus (Ce) gene expression linked to increased trait-like Ce metabolism and anxious temperament in young primates

GSE35850 Leukocyte gene expression in rhesus macaques reared under different conditions

GSE33588 Human-specific patterns of gene expression in the brain

GSE33010 Human-specific patterns of gene expression in the brain (Arrays)

GSE8644 Differentially expressed genes among motor and prefrontal areas of macaque monkey neocortex

GSE31613 Transcriptional architecture of the primate neocortex

GSE8859 Laser capture microdissected vervet monkey lateral geniculate nucleus hybridized to the Rhesus Macaque Genome Array.

GSE9795 Monocular Visual Deprivation in Macaque Monkeys: A Profile in the Gene Expression of the LGN by LCM

GSE11697 Young and aged rhesus hippocampal CA1 and DG

GSE16169 Effect of Ovarian Hormone on Gene Expression in Laser Captured Serotonin Neurons from Monkeys

GSE16172 Effect of Ovarian Hormone on Gene Expression in Rhesus Dorsal Raphe Nucleus with Rhesus Affymetrix Chip

GSE16485 Expression data from macaque taste buds and lingual epithelium

GSE29901
Retinal whole genome microarray analysis after irradiated injury of intraorbital nerve in the monkey

GSE33707 Protective Role for the Disulfide Isomerase PDIA3 in Methamphetamine Neurotoxicity

 

Aging

GSE11697 Young and aged rhesus hippocampal CA1 and DG

Apoptosis - Effects of aging on apoptosis gene expression in oral mucosal tissues

 

Transplantation

GSE22624 Effect of brain death on gene expression in liver from rhesus macaque

 

RNA helicase A

GSE14055 Changes in polysome loading as a consequence of RHA downregulation

GSE14056 Co-immunoprecipitation of RNAs with RNA helicase A (RHA)

GSE14057 Identification of transcripts regulated by RNA helicase A (RHA)