Sanjit Pandey

Sanjit Pandey

Sanjit Pandey

Research Interest:

I am interested in Bioinformatics research. I am working on methods to identify the metagenomes present in the metagenomic samples collected from different environments. I plan to develop an efficient algorithm to identify and quantify the organisms present in the metagenomic samples.

Publications:

  1. Staucha K. L.,Villeneuvea L. M., Purnella P. R., Pandey S., Gudab C., Fox H. S. (2016) SWATH-MS proteome profiling data comparison of DJ-1, Parkin, and PINK1 knockout rat striatal mitochondria. Data in Brief.
  2. Premaraj S. T., Pandey S., Xiao P., Guda C., Premaraj S..Early Disturbance in the Bacterial Community Structure of Supragingival Plaque with the Introduction of Orthodontic Appliances - Molecular Bacterial Analysis (Submitted)
  3. Cserhati M, Pandey S, Beaudoin J J, Baccaglini, L, Guda C, Fox H S. (2015) The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. Database. (Oxford).
  4. Negi S, Pandey S, Srinivasan S, Mohammed A, and Guda C(2015) LocSigDB: a database of protein localization signals. Database. (Oxford), 1–7
  5. Zimin, A. V., Cornish, A. S., Maudhoo, MD, Gibbs, R. M. Zhang, X., Pandey, S., Meehan, D. T.,Wipfler, K., Bosinger, S. E., Johnson, Z. P., Tharp, G. K., Marcais, G., Roberts, M., Ferguson, B., Fox, H., Treangen, T., Salzberg, S. L., Yorke, J. A. and Norgren, R. B. (2014) A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biology Direct, 9:20.
  6. Mohibi S, Gurumurthy , Nag A, Wang J, Mirza S, Mian Y, Quinn M, Katafiasz B, Eudy J, Pandey S, Guda C, Naramura N, Band H and Band V. (2012) Mammalian alteration/deficiency in activation 3 (Ada3) is essential for embryonic development and cell cycle progression. J Biol Chem, doi: 10.1074/jbc.M112.378901
  7. King B, Vural S, Pandey S, Barteau A, Guda C. (2012) ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes. BMC Research Notes, 5:351.
  8. Mukherjee A, Reisdorph N, Guda C, Pandey S, Roy SK. (2012) Changes in ovarian protein expression during primordial follicle formation in the hamster. Molecular and Cellular Endocrinology, 348:87-94.
  9. Zhu X, Ozturk F, Pandey S, Guda C, Nowshad A. (2012) Implications of TGF-B on transcriptome and cellular biofunctions of palatal mesenchyme. Frontiers in Craniofacial Biology, doi:10.3389/fphys.2012.00085

Abstracts:

Conference Presentations:

Advisor: Babu Guda, PhD