- B.E. in Computer Engineering, Tribhuvan University, 2006
- MS Computer Science, University of Nebraska at Omaha, 2010
I am interested in Bioinformatics research. I am working on methods to identify the metagenomes present in the metagenomic samples collected from different environments. I plan to develop an efficient algorithm to identify and quantify the organisms present in the metagenomic samples.
- Staucha K. L.,Villeneuvea L. M., Purnella P. R., Pandey S., Gudab C., Fox H. S. (2016) SWATH-MS proteome profiling data comparison of DJ-1, Parkin, and PINK1 knockout rat striatal mitochondria. Data in Brief.
- Premaraj S. T., Pandey S., Xiao P., Guda C., Premaraj S..Early Disturbance in the Bacterial Community Structure of Supragingival Plaque with the Introduction of Orthodontic Appliances - Molecular Bacterial Analysis (Submitted)
- Cserhati M, Pandey S, Beaudoin J J, Baccaglini, L, Guda C, Fox H S. (2015) The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. Database. (Oxford).
- Negi S, Pandey S, Srinivasan S, Mohammed A, and Guda C(2015) LocSigDB: a database of protein localization signals. Database. (Oxford), 1–7
- Zimin, A. V., Cornish, A. S., Maudhoo, MD, Gibbs, R. M. Zhang, X., Pandey, S., Meehan, D. T.,Wipfler, K., Bosinger, S. E., Johnson, Z. P., Tharp, G. K., Marcais, G., Roberts, M., Ferguson, B., Fox, H., Treangen, T., Salzberg, S. L., Yorke, J. A. and Norgren, R. B. (2014) A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biology Direct, 9:20.
- Mohibi S, Gurumurthy , Nag A, Wang J, Mirza S, Mian Y, Quinn M, Katafiasz B, Eudy J, Pandey S, Guda C, Naramura N, Band H and Band V. (2012) Mammalian alteration/deficiency in activation 3 (Ada3) is essential for embryonic development and cell cycle progression. J Biol Chem, doi: 10.1074/jbc.M112.378901
- King B, Vural S, Pandey S, Barteau A, Guda C. (2012) ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes. BMC Research Notes, 5:351.
- Mukherjee A, Reisdorph N, Guda C, Pandey S, Roy SK. (2012) Changes in ovarian protein expression during primordial follicle formation in the hamster. Molecular and Cellular Endocrinology, 348:87-94.
- Zhu X, Ozturk F, Pandey S, Guda C, Nowshad A. (2012) Implications of TGF-B on transcriptome and cellular biofunctions of palatal mesenchyme. Frontiers in Craniofacial Biology, doi:10.3389/fphys.2012.00085
- Zhang W, Klinkebiel D, Pandey S, Wang D, Liu S, Guda C, Odunsi K, Karpf A R. (2013) Genomic and epigenomic characterization of global DNA hypomethylation in human epithelial ovarian cancer. Clinical Cancer Research. 19; B12
- Shukla A, Chaturvedi N K, Joshi S S, Bierman P, Cornish A, Pandey S, Guda C. (2013) The Role Of PRDM1 and Its Interacting Proteins In The Pathogenesis Of Chronic Lymphocytic Leukemia. Blood: 122 (21)
- Wehrkamp CJ, Smith MA, Natarajan SK, Pandey S, Guda C, Mott JL (2013) Genome-wide analysis of miR-106b targets in cholangiocarcinoma cells identifies tumor suppressors Kruppel-like factor-2 and-6, characterization of an antiapoptotic microRNA, HEPATOLOGY
- Pandey S, Peng H, Ding S, Guda C (2011) CysNO-DB: A database of S-nitrosylation sites, presented at the Rocky Mountain Bioinformatics Conference (Rocky '11), Aspen, Colorado.
- Pandey S, Guda C, Norgren R(2011) A database framework for identifying coding sequence from NextGen mRNA sequences, presented at the Rocky Mountain Bioinformatics Conference (Rocky '11), Aspen, Colorado.