Assistant Director,
Bioinformatics and Systems Biology Core
Dept. of Genetics, Cell Biology & Anatomy
College of Medicine, University of Nebraska Medical Center
Education:
MS in Computer Science, University of Nebraska at Omaha, 2010
Contact:
Phone: (402) 559-5925
Email: sanjit.pandey (at) unmc (dot) edu
Mailing Address:
DRC6012
985145, Nebraska Medical Center
Omaha, NE 68198-5145
Recent Publications:
- SK Shakyawar, S Pandey, DJ Harvey, G Bousfield, C Guda. FGDB: Database of follicle stimulating hormone glycans. Computational and Structural Biotechnology Journal, Volume 19, 2021, 1635-1640
- Zhang, W.; Klinkebiel, D.; Barger, C.J.; Pandey, S.; Guda, C.; Miller, A.; Akers, S.N.; Odunsi, K.; Karpf, A.R. Global DNA Hypomethylation in Epithelial Ovarian Cancer: Passive Demethylation and Association with Genomic Instability. Cancers 2020, 12, 764.
- AJ Heithoff, SA Totusek, D Le, L Barwick, G Gensler, DR Franklin, AC Dye, S Pandey, S Sherman, C Guda, HS Fox (2019). The integrated National NeuroAIDS Tissue Consortium database: a rich platform for neuroHIV research. Database, Volume 2019,2019,bay134
- Massilamany C, Nandakumar R, Madayiputhiya N, Pandey S, Guda C, Reddy J (2017). Gender Differences in the Expression of Proteins in Autoreactive T-cells Specific to Central Nervous System Myelin Proteolipid Protein 139-151. Journal of Autoimmune Disorders. Vol.3 No.1:30
- Stauch KL, Villeneuve LM, Purnell PR, Pandey S, Guda C, Fox HS (2016). SWATH-MS proteome profiling data comparison of DJ-1, Parkin, and PINK1 knockout rat striatal mitochondria. Data in brief 9, 589-593
- Cserhati M, Pandey S, Beaudoin J J, Baccaglini, L, Guda C, Fox H S. (2015) The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. Database. Database, 2015, 1–10.
- Negi S, Pandey S, Srinivasan S, Mohammed A, and Guda C(2015) LocSigDB: a database of protein localization signals. Database. (Oxford), 1–7
- Zimin, A. V., Cornish, A. S., Maudhoo, MD, Gibbs, R. M. Zhang, X., Pandey, S., Meehan, D. T.,Wipfler, K., Bosinger, S. E., Johnson, Z. P., Tharp, G. K., Marcais, G., Roberts, M., Ferguson, B., Fox, H., Treangen, T., Salzberg, S. L., Yorke, J. A. and Norgren, R. B. (2014) A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Biology Direct, 9:20.
- Mohibi S, Gurumurthy , Nag A, Wang J, Mirza S, Mian Y, Quinn M, Katafiasz B, Eudy J, Pandey S, Guda C, Naramura N, Band H and Band V. (2012) Mammalian alteration/deficiency in activation 3 (Ada3) is essential for embryonic development and cell cycle progression. J Biol Chem, doi: 10.1074/jbc.M112.378901
- King B, Vural S, Pandey S, Barteau A, Guda C. (2012) ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes. BMC Research Notes, 5:351.
- Mukherjee A, Reisdorph N, Guda C, Pandey S, Roy SK. (2012) Changes in ovarian protein expression during primordial follicle formation in the hamster. Molecular and Cellular Endocrinology, 348:87-94.
- Zhu X, Ozturk F, Pandey S, Guda C, Nowshad A. (2012) Implications of TGF-B on transcriptome and cellular biofunctions of palatal mesenchyme. Frontiers in Craniofacial Biology , doi:10.3389/fphys.2012.00085
Abstracts:
- Dhar K, Yi Y, Weedman NM, Kittrell J, Pandey S, Um JY, Eudy JD, Lowes BD (2016) Clinical Genetics in Cardio-Oncology. The Journal of Heart and Lung Transplantation 35 (4), S171-S172
- Zhang W, Klinkebiel D, Pandey S, Wang D, Liu S, Guda C, Odunsi K, Karpf A R. (2013) Genomic and epigenomic characterization of global DNA hypomethylation in human epithelial ovarian cancer. Clinical Cancer Research. 19; B12
- Shukla A, Chaturvedi N K, Joshi S S, Bierman P, Cornish A, Pandey S, Guda C. (2013) The Role Of PRDM1 and Its Interacting Proteins In The Pathogenesis Of Chronic Lymphocytic Leukemia. Blood: 122 (21)
- Wehrkamp CJ, Smith MA, Natarajan SK, Pandey S, Guda C, Mott JL (2013) Genome-wide analysis of miR-106b targets in cholangiocarcinoma cells identifies tumor suppressors Kruppel-like factor-2 and-6, characterization of an antiapoptotic microRNA, HEPATOLOGY
Conference Presentations:
- Chandel DS, Pandey S, Guda C, Panigrahi P, Kharbanda KK (2017). Role of Betaine in Preventing Alcohol-Induced Gut Dysbiosis. The 2017 Gordon Research Conference (GRC) on Alcohol-Induced End Organ Diseases "Metabolic Reprogramming and Molecular Mechanisms of Tissue Injury by Alcohol". March 26-31, 2017
- Chandel DS, Pandey S, Panigrahi P, Guda C, Singh S, Agyabeng A, Matis M, Osna N, Tuma D, Kharbanda KK. (2017) Effect of betaine on alcohol-induced gut dysbiosis. 19th International Symposium on Cells of the Hepatic Sinusoid
- Pandey S, Peng H, Ding S, Guda C (2011) CysNO-DB: A database of S-nitrosylation sites, presented at the Rocky Mountain Bioinformatics Conference (Rocky '11), Aspen, Colorado.
- Pandey S, Guda C, Norgren R(2011) A database framework for identifying coding sequence from NextGen mRNA sequences, presented at the Rocky Mountain Bioinformatics Conference (Rocky '11), Aspen, Colorado.