Latest Publications

Recent publications from various labs within the Department of Genetics, Cell Biology and Anatomy:

Roychoudhury, S., Pramanik, S., Harris, H. L., Tarpley, M., Sarkar, A., Spagnol, G., Sorgen, P. L., Chowdhury, D., Band, V., Klinkebiel, D., & Bhakat, K. K. (2020). Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome. Proceedings of the National Academy of Sciences of the United States of America117(21), 11409–11420. 

Vellichirammal, N. N., Albahrani, A., Banwait, J. K., Mishra, N. K., Li, Y., Roychoudhury, S., Kling, M. J., Mirza, S., Bhakat, K. K., Band, V., Joshi, S. S., & Guda, C. (2020). Pan-Cancer Analysis Reveals the Diverse Landscape of Novel Sense and Antisense Fusion Transcripts. Molecular therapy. Nucleic acids19, 1379–1398. 

Swenson, S. A., Gilbreath, T. J., Vahle, H., Hynes-Smith, R. W., Graham, J. H., Law, H. C., Amador, C., Woods, N. T., Green, M. R., & Buckley, S. M. (2020). UBR5 HECT domain mutations identified in mantle cell lymphoma control maturation of B cells. Blood136(3), 299–312. 

Turner, P., Leab, P., Ly, S., Sao, S., Miliya, T., Heffelfinger, J. D., Batmunkh, N., Lessa, F. C., Walldorf, J. A., Hyde, T. B., Ork, V., Hossain, M. S., Gould, K. A., Hinds, J., Cooper, B. S., Ngoun, C., Turner, C., & Day, N. (2020). Impact of 13-Valent Pneumococcal Conjugate Vaccine on Colonization and Invasive Disease in Cambodian Children. Clinical infectious diseases: an official publication of the Infectious Diseases Society of America70(8), 1580–1588.

Tan, Y. D., Xiao, P., & Guda, C. (2020). In-depth Mendelian randomization analysis of causal factors for coronary artery disease. Scientific reports10(1), 9208. 

Bahado-Singh, R., Vishweswaraiah, S., Mishra, N. K., Guda, C., & Radhakrishna, U. (2020). Placental DNA methylation changes in detection of tetralogy of Fallot. Ultrasound in obstetrics & gynecology: the official journal of the International Society of Ultrasound in Obstetrics and Gynecology55(6), 768–775.

Kumar, S., Wang, X., Avuthu, N., Bertolini, T. B., Terhorst, C., Guda, C., Daniell, H., & Herzog, R. W. (2020). Role of Small Intestine and Gut Microbiome in Plant-Based Oral Tolerance for Hemophilia. Frontiers in immunology11, 844. 

Ray, S., Chee, L., Matson, D. R., Palermo, N. Y., Bresnick, E. H., & Hewitt, K. J. (2020). Sterile α-motif domain requirement for cellular signaling and survival. The Journal of biological chemistry295(20), 7113–7125. 

Ho, Y. H., Man, K., Joshi, S. S., Pantawane, M. V., Wu, T. C., Yang, Y., & Dahotre, N. B. (2020). In-vitro biomineralization and biocompatibility of friction stir additively manufactured AZ31B magnesium alloy-hydroxyapatite composites. Bioactive materials5(4), 891–901. 

Rowley, M. J., Poulet, A., Nichols, M. H., Bixler, B. J., Sanborn, A. L., Brouhard, E. A., Hermetz, K., Linsenbaum, H., Csankovszki, G., Lieberman Aiden, E., & Corces, V. G. (2020). Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals. Genome research30(3), 447–458. 

Ward, M. D., Brueggemann, E. E., Kenny, T., Reitstetter, R. E., Mahone, C. R., Trevino, S., Wetzel, K., Donnelly, G. C., Retterer, C., Norgren, R. B., Jr, Panchal, R. G., Warren, T. K., Bavari, S., & Cazares, L. H. (2019). Characterization of the plasma proteome of nonhuman primates during Ebola virus disease or melioidosis: a host response comparison. Clinical proteomics16, 7. 

Gurumurthy, C. B., O'Brien, A. R., Quadros, R. M., Adams, J., Jr, Alcaide, P., Ayabe, S., Ballard, J., Batra, S. K., Beauchamp, M. C., Becker, K. A., Bernas, G., Brough, D., Carrillo-Salinas, F., Chan, W., Chen, H., Dawson, R., DeMambro, V., D'Hont, J., Dibb, K. M., Eudy, J. D., … Burgio, G. (2019). Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles: a multi-center evaluation. Genome biology20(1), 171. 

Lee, D., Erickson, A., Dudley, A. T., & Ryu, S. (2019). Mechanical stimulation of growth plate chondrocytes: Previous approaches and future directions. Experimental mechanics59(9), 1261–1274.