Publications

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2022

Xue W, Liu B, Zhang H, Ryu S, Kuss M, Shukla D, Hu G, Shi W, Jiang X, Lei Y, Duan B. Controllable fabrication of alginate/poly-L-ornithine polyelectrolyte complex hydrogel networks as therapeutic drug and cell carriers. Acta Biomater. 2022 Jan 15; 138:182-192. doi: 10.1016/j.actbio.2021.11.004. Epub 2021 Nov 10. PMID: 34774784. 

Leon F, Seshacharyulu P, Nimmakayala RK, Chugh S, Karmakar S, Nallasamy P, Vengoji R, Rachagani S, Cox JL, Mallya K, Batra SK, Ponnusamy MP. Reduction in O-glycome induces differentially glycosylated CD44 to promote stemness and metastasis in pancreatic cancer. Oncogene. 2022 Jan;41(1):57-71. doi: 10.1038/s41388-021-02047-2. Epub 2021 Oct 21. PMID: 34675409; PMCID: PMC8727507. 

 

2021 

Al-Mugotir M, Lovelace JJ, George J, Bessho M, Pal D, Struble L, Kolar C, Rana S, Natarajan A, Bessho T, Borgstahl GEO. Selective killing of homologous recombination-deficient cancer cell lines by inhibitors of the RPA:RAD52 protein-protein interaction. PLoS One. 2021 Mar 30;16(3): e0248941. doi: 10.1371/journal.pone.0248941. PMID: 33784323; PMCID: PMC8009417. 

Bhattacharya DS, Bapat A, Svechkarev D, Mohs AM. Water-Soluble Blue Fluorescent Nonconjugated Polymer Dots from Hyaluronic Acid and Hydrophobic Amino Acids. ACS Omega. 2021 Jul 9;6(28):17890-17901. doi: 10.1021/acsomega.1c01343. Erratum in: ACS Omega. 2021 Oct 05;6(41):27598. PMID: 34308024; PMCID: PMC8296014. 

Casey CA, Macke AJ, Gough RR, Pachikov AN, Morris ME, Thomes PG, Kubik JL, Holzapfel MS, Petrosyan A. Alcohol-Induced Liver Injury: Down-regulation and Redistribution of Rab3D Results in Atypical Protein Trafficking. Hepatol Commun. 2021 Sep 7. doi: 10.1002/hep4.1811. Epub ahead of print. PMID: 34494400. 

Chaudhary S, Pothuraju R, Rachagani S, Siddiqui JA, Atri P, Mallya K, Nasser MW, Sayed Z, Lyden ER, Smith L, Gupta SD, Ralhan R, Lakshmanan I, Jones DT, Ganti AK, Macha MA, Batra SK. Dual blockade of EGFR and CDK4/6 delays head and neck squamous cell carcinoma progression by inducing metabolic rewiring. Cancer Lett. 2021 Jul 10; 510:79-92. doi: 10.1016/j.canlet.2021.04.004. Epub 2021 Apr 17. PMID: 33878394; PMCID: PMC8153085. 

Farmer T, Xie S, Naslavsky N, Stöckli J, James DE, Caplan S. Defining the protein and lipid constituents of tubular recycling endosomes. J Biol Chem. 2021 Jan-Jun;296:100190. doi: 10.1074/jbc.RA120.015992. Epub 2021 Jan 28. PMID: 33334886; PMCID: PMC7948492. 

Kaushal JB, Bhatia R, Kanchan RK, Raut P, Mallapragada S, Ly QP, Batra SK, Rachagani S. Repurposing Niclosamide for Targeting Pancreatic Cancer by Inhibiting Hh/Gli Non-Canonical Axis of Gsk3β. Cancers (Basel). 2021 Jun 22;13(13):3105. doi: 10.3390/cancers13133105.  

Muthuraj PG, Pattnaik A, Sahoo PK, Islam MT, Pattnaik AK, Byrareddy SN, Hanson C, Anderson Berry A, Kachman SD, Natarajan SK. Palmitoleate Protects against Zika Virus-Induced Placental Trophoblast Apoptosis. Biomedicines. 2021 Jun 4;9(6):643. doi: 10.3390/biomedicines9060643. PMID: 34200091; PMCID: PMC8226770. 

Pachikov AN, Gough RR, Christy CE, Morris ME, Casey CA, LaGrange CA, Bhat G, Kubyshkin AV, Fomochkina II, Zyablitskaya EY, Makalish TP, Golubinskaya EP, Davydenko KA, Eremenko SN, Riethoven JM, Maroli AS, Payne TS, Powers R, Lushnikov AY, Macke AJ, Petrosyan A. The non-canonical mechanism of ER stress-mediated progression of prostate cancer. J Exp Clin Cancer Res. 2021 Sep 14;40(1):289. doi: 10.1186/s13046-021-02066-7. PMID: 34521429; PMCID: PMC8439065. 

Polavaram NS, Dutta S, Islam R, Bag AK, Roy S, Poitz D, Karnes J, Hofbauer LC, Kohli M, Costello BA, Jimenez R, Batra SK, Teply BA, Muders MH, Datta K. Tumor- and osteoclast-derived NRP2 in prostate cancer bone metastases. Bone Res. 2021 May 14;9(1):24. doi: 10.1038/s41413-021-00136-2. PMID: 33990538; PMCID: PMC8121836. 

Przygrodzka E, Hou X, Zhang P, Plewes MR, Franco R, Davis JS. PKA and AMPK Signaling Pathways Differentially Regulate Luteal Steroidogenesis. Endocrinology. 2021 Apr 1;162(4):bqab015. doi: 10.1210/endocr/bqab015. PMID: 33502468; PMCID: PMC7899060. 

Qiao F, Law HC, Krieger KL, Clement EJ, Xiao Y, Buckley SM, Woods NT. Ctdp1 deficiency leads to early embryonic lethality in mice and defects in cell cycle progression in MEFs. Biol Open. 2021 Jan 6;10(1): bio057232. doi: 10.1242/bio.057232. PMID: 33408128; PMCID: PMC7803460. 

Rao C, Frodyma DE, Southekal S, Svoboda RA, Black AR, Guda C, Mizutani T, Clevers H, Johnson KR, Fisher KW, Lewis RE. KSR1- and ERK-dependent translational regulation of the epithelial-to-mesenchymal transition. Elife. 2021 May 10;10: e66608. doi: 10.7554/eLife.66608. PMID: 33970103; PMCID: PMC8195604. 

Sagar, S., Leiphrakpam, P. D., Thomas, D., McAndrews, K. L., Caffrey, T. C., Swanson, B. J., Clausen, H., Wandall, H. H., Hollingsworth, M. A., & Radhakrishnan, P. (2021). MUC4 enhances gemcitabine resistance and malignant behaviour in pancreatic cancer cells expressing cancer-associated short O-glycans. Cancer Letters, 503, 91-102.  

Saleem I, Mirza S, Sarkar A, Raza M, Mohapatra B, Mushtaq I, Kim JH, Mishra NK, Alsaleem MA, Rakha EA, Qiu F, Guda C, Band H, Band V. The Mammalian Ecdysoneless Protein Interacts with RNA Helicase DDX39A To Regulate Nuclear mRNA Export. Mol Cell Biol. 2021 Jun 23;41(7):e0010321. doi: 10.1128/MCB.00103-21. Epub 2021 Jun 23. PMID: 33941617; PMCID: PMC8224239. 

Sweeter JM, Kudrna K, Hunt K, Thomes P, Dickey BF, Brody SL, Dickinson JD. Autophagy of mucin granules contributes to resolution of airway mucous metaplasia. Sci Rep. 2021 Jun 22;11(1):13037. doi: 10.1038/s41598-021-91932-7. PMID: 34158522; PMCID: PMC8219712. 

Thomas D, Sagar S, Liu X, Lee HR, Grunkemeyer JA, Grandgenett PM, Caffrey T, O'Connell KA, Swanson B, Marcos-Silva L, Steentoft C, Wandall HH, Maurer HC, Peng XL, Yeh JJ, Qiu F, Yu F, Madiyalakan R, Olive KP, Mandel U, Clausen H, Hollingsworth MA, Radhakrishnan P. Isoforms of MUC16 activate oncogenic signaling through EGF receptors to enhance the progression of pancreatic cancer. Mol Ther. 2021 Apr 7;29(4):1557-1571. doi: 10.1016/j.ymthe.2020.12.029. Epub 2020 Dec 25. PMID: 33359791; PMCID: PMC8058431. 

Vengoji R, Atri P, Macha MA, Seshacharyulu P, Perumal N, Mallya K, Liu Y, Smith LM, Rachagani S, Mahapatra S, Ponnusamy MP, Jain M, Batra SK, Shonka N. Differential gene expression-based connectivity mapping identified novel drug candidate and improved Temozolomide efficacy for Glioblastoma. J Exp Clin Cancer Res. 2021 Oct 25;40(1):335. doi: 10.1186/s13046-021-02135-x. PMID: 34696786; PMCID: PMC8543939. 

Wyatt TA, Warren KJ, Wetzel TJ, Suwondo T, Rensch GP, DeVasure JM, Mosley DD, Kharbanda KK, Thiele GM, Burnham EL, Bailey KL, Yeligar SM. Malondialdehyde-Acetaldehyde Adduct Formation Decreases Immunoglobulin A Transport across Airway Epithelium in Smokers Who Abuse Alcohol. Am J Pathol. 2021 Oct;191(10):1732-1742. doi: 10.1016/j.ajpath.2021.06.007. Epub 2021 Jun 27. PMID: 34186073; PMCID: PMC8485061. 

 

2020 

Dhawan K, Naslavsky N, Caplan S. Sorting nexin 17 (SNX17) links endosomal sorting to Eps15 homology domain protein 1 (EHD1)-mediated fission machinery. J Biol Chem. 2020 Mar 20;295(12):3837-3850. doi: 10.1074/jbc.RA119.011368. Epub 2020 Feb 10. PMID: 32041776; PMCID: PMC7086038. 

Mukadam IZ, Machhi J, Herskovitz J, Hasan M, Oleynikov MD, Blomberg WR, Svechkarev D, Mohs AM, Zhou Y, Dash P, McMillan J, Gorantla S, Garrison J, Gendelman HE, Kevadiya BD. Rilpivirine-associated aggregation-induced emission enables cell-based nanoparticle tracking. Biomaterials. 2020 Feb; 231:119669. doi: 10.1016/j.biomaterials.2019.119669. Epub 2019 Dec 7. PMID: 31865227; PMCID: PMC7334833. 

Roychoudhury S, Pramanik S, Harris HL, Tarpley M, Sarkar A, Spagnol G, Sorgen PL, Chowdhury D, Band V, Klinkebiel D, Bhakat KK. Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome. Proc Natl Acad Sci U S A. 2020 May 26;117(21):11409-11420. doi: 10.1073/pnas.1912355117. Epub 2020 May 13. PMID: 32404420; PMCID: PMC7260947. 

Wu S, Zhou R, Zhou F, Streubel PN, Chen S, Duan B. Electrospun thymosin Beta-4 loaded PLGA/PLA nanofiber/ microfiber hybrid yarns for tendon tissue engineering application. Mater Sci Eng C Mater Biol Appl. 2020 Jan;106:110268. doi: 10.1016/j.msec.2019.110268. Epub 2019 Oct 12. PMID: 31753373; PMCID: PMC7061461. 

Zheng L, Chenavas S, Kieken F, Trease A, Brownell S, Anbanandam A, Sorgen PL, Spagnol G. Calmodulin Directly Interacts with the Cx43 Carboxyl-Terminus and Cytoplasmic Loop Containing Three ODDD-Linked Mutants (M147T, R148Q, and T154A) that Retain α-Helical Structure, but Exhibit Loss-of-Function and Cellular Trafficking Defects. Biomolecules. 2020 Oct 17;10(10):1452. doi: 10.3390/biom10101452. PMID: 33080786; PMCID: PMC7602980. 

Zheng L, Trease AJ, Katsurada K, Spagnol G, Li H, Shi W, Duan B, Patel KP, Sorgen PL. Inhibition of Pyk2 and Src activity improves Cx43 gap junction intercellular communication. J Mol Cell Cardiol. 2020 Dec; 149:27-40. doi: 10.1016/j.yjmcc.2020.09.004. Epub 2020 Sep 18. PMID: 32956670; PMCID: PMC7736531. 

 

2019 

Farmer T, O'Neill KL, Naslavsky N, Luo X, Caplan S. Retromer facilitates the localization of Bcl-xL to the mitochondrial outer membrane. Mol Biol Cell. 2019 May 1;30(10):1138-1146. doi: 10.1091/mbc. E19-01-0044. Epub 2019 Mar 6. PMID: 30840537; PMCID: PMC6724524. 

Frisbie CP, Lushnikov AY, Krasnoslobodtsev AV, Riethoven JM, Clarke JL, Stepchenkova EI, Petrosyan A. Post-ER Stress Biogenesis of Golgi Is Governed by Giantin. Cells. 2019 Dec 13;8(12):1631. doi: 10.3390/cells8121631. PMID: 31847122; PMCID: PMC6953117. 

Hein AL, Brandquist ND, Ouellette CY, Seshacharyulu P, Enke CA, Ouellette MM, Batra SK, Yan Y. PR55α regulatory subunit of PP2A inhibits the MOB1/LATS cascade and activates YAP in pancreatic cancer cells. Oncogenesis. 2019 Oct 28;8(11):63. doi: 10.1038/s41389-019-0172-9. PMID: 31659153; PMCID: PMC6817822. 

Hu H, Petrosyan A, Osna NA, Liu T, Olou AA, Alakhova DY, Singh PK, Kabanov AV, Faber EA Jr, Bronich TK. Pluronic block copolymers enhance the anti-myeloma activity of proteasome inhibitors. J Control Release. 2019 Jul 28;306:149-164. doi: 10.1016/j.jconrel.2019.05.026. Epub 2019 May 20. PMID: 31121280; PMCID: PMC6822276. 

Lee D, Erickson A, Dudley AT, Ryu S. A Microfluidic Platform for Stimulating Chondrocytes with Dynamic Compression. J Vis Exp. 2019 Sep 13;(151):10.3791/59676. doi: 10.3791/59676. PMID: 31566611; PMCID: PMC7222626. 

Manca S, Frisbie CP, LaGrange CA, Casey CA, Riethoven JM, Petrosyan A. The Role of Alcohol-Induced Golgi Fragmentation for Androgen Receptor Signaling in Prostate Cancer. Mol Cancer Res. 2019 Jan;17(1):225-237. doi: 10.1158/1541-7786.MCR-18-0577. Epub 2018 Sep 17. PMID: 30224543; PMCID: PMC6318054. 

Miller DR, Ingersoll MA, Chatterjee A, Baker B, Shrishrimal S, Kosmacek EA, Zhu Y, Cheng PW, Oberley-Deegan RE, Lin MF. p66Shc protein through a redox mechanism enhances the progression of prostate cancer cells towards castration-resistance. Free Radic Biol Med. 2019 Aug 1; 139:24-34. doi: 10.1016/j.freeradbiomed.2019.05.015. Epub 2019 May 14. PMID: 31100478; PMCID: PMC6620027. 

Mishra B, Lakshmaiah Narayana J, Lushnikova T, Wang X, Wang G. Low cationicity is important for systemic in vivo efficacy of database-derived peptides against drug-resistant Gram-positive pathogens. Proc Natl Acad Sci U S A. 2019 Jul 2;116(27):13517-13522. doi: 10.1073/pnas.1821410116. Epub 2019 Jun 17. PMID: 31209048; PMCID: PMC6613076. 

Morwitzer MJ, Tritsch SR, Cazares LH, Ward MD, Nuss JE, Bavari S, Reid SP. Identification of RUVBL1 and RUVBL2 as Novel Cellular Interactors of the Ebola Virus Nucleoprotein. Viruses. 2019 Apr 23;11(4):372. doi: 10.3390/v11040372. PMID: 31018511; PMCID: PMC6521077. 

Olson MG, Widner RE, Jorgenson LM, Lawrence A, Lagundzin D, Woods NT, Ouellette SP, Rucks EA. Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells. Infect Immun. 2019 Oct 18;87(11): e00537-19. doi: 10.1128/IAI.00537-19. PMID: 31405957; PMCID: PMC6803327. 

Trease AJ, Li H, Spagnol G, Zheng L, Stauch KL, Sorgen PL. Regulation of Connexin32 by ephrin receptors and T-cell protein-tyrosine phosphatase. J Biol Chem. 2019 Jan 4;294(1):341-350. doi: 10.1074/jbc.RA118.003883. Epub 2018 Nov 6. PMID: 30401746; PMCID: PMC6322898. 

Wood NA, Chung KY, Blocker AM, Rodrigues de Almeida N, Conda-Sheridan M, Fisher DJ, Ouellette SP. Initial Characterization of the Two ClpP Paralogs of Chlamydia trachomatis Suggests Unique Functionality for Each. J Bacteriol. 2018 Dec 20;201(2): e00635-18. doi: 10.1128/JB.00635-18. Erratum in: J Bacteriol. 2019 Nov 20;201(24): PMID: 30396899; PMCID: PMC6304667. 

Xie S, Farmer T, Naslavsky N, Caplan S. MICAL-L1 coordinates ciliogenesis by recruiting EHD1 to the primary cilium. J Cell Sci. 2019 Nov 14;132(22): jcs233973. doi: 10.1242/jcs.233973. PMID: 31615969; PMCID: PMC6899013. 

Zhang J, Yang X, Zhou Y, Fox H, Xiong H. Direct contacts of microglia on myelin sheath and Ranvier's node in the corpus callosum in rats. J Biomed Res. 2019 Jun 4;33(3):192-200. doi: 10.7555/JBR.32.20180019. PMID: 30403198; PMCID: PMC6551421. 

Zheng L, Li H, Cannon A, Trease AJ, Spagnol G, Zheng H, Radio S, Patel K, Batra S, Sorgen PL. Phosphorylation of Cx43 residue Y313 by Src contributes to blocking the interaction with Drebrin and disassembling gap junctions. J Mol Cell Cardiol. 2019 Jan; 126:36-49. doi: 10.1016/j.yjmcc.2018.11.008. Epub 2018 Nov 15. PMID: 30448479. 

 

2018 

Aithal A, Junker WM, Kshirsagar P, Das S, Kaur S, Orzechowski C, Gautam SK, Jahan R, Sheinin YM, Lakshmanan I, Ponnusamy MP, Batra SK, Jain M. Development and characterization of carboxy-terminus specific monoclonal antibodies for understanding MUC16 cleavage in human ovarian cancer. PLoS One. 2018 Apr 30;13(4):e0193907. doi: 10.1371/journal.pone.0193907. PMID: 29708979; PMCID: PMC5927449. 

Casey CA, Thomes P, Manca S, Petrosyan A. Giantin Is Required for Post-Alcohol Recovery of Golgi in Liver Cells. Biomolecules. 2018 Nov 16;8(4):150. doi: 10.3390/biom8040150. PMID: 30453527; PMCID: PMC6316505. 

Dagur RS, Wang W, Cheng Y, Makarov E, Ganesan M, Suemizu H, Gebhart CL, Gorantla S, Osna N, Poluektova LY. Human hepatocyte depletion in the presence of HIV-1 infection in dual reconstituted humanized mice. Biol Open. 2018 Feb 13;7(2): bio029785. doi: 10.1242/bio.029785. PMID: 29361613; PMCID: PMC5861361. 

Daverey A, Agrawal SK. Pre and post treatment with curcumin and resveratrol protects astrocytes after oxidative stress. Brain Res. 2018 Aug 1;1692:45-55. doi: 10.1016/j.brainres.2018.05.001. Epub 2018 May 2. PMID: 29729252. 

Duryee MJ, Wiese BM, Bowman JR, Vanlandingham JD, Klassen LW, Thiele GE, Hunter CD, Anderson DR, Mikuls TR, Thiele GM. Liver tissue metabolically transformed by alcohol induces immune recognition of liver self-proteins but not in vivo inflammation. Am J Physiol Gastrointest Liver Physiol. 2018 Mar 1;314(3):G418-G430. doi: 10.1152/ajpgi.00183.2017. Epub 2017 Dec 28. PMID: 29351393; PMCID: PMC5899239. 

Fan W , Zhang W , Alshehri S , Garrison JC . Increasing time on target: utilization of inhibitors of cysteine cathepsins to enhance the tumor retention of receptor-targeted agents. Chem Commun (Camb). 2018 Oct 4;54(80):11268-11271. doi: 10.1039/c8cc05982a. PMID: 30182093; PMCID: PMC6181586. 

Kiyota T, Machhi J, Lu Y, Dyavarshetty B, Nemati M, Zhang G, Mosley RL, Gelbard HA, Gendelman HE. URMC-099 facilitates amyloid-β clearance in a murine model of Alzheimer's disease. J Neuroinflammation. 2018 May 5;15(1):137. doi: 10.1186/s12974-018-1172-y. PMID: 29729668; PMCID: PMC5935963. 

Kuss M, Kim J, Qi D, Wu S, Lei Y, Chung S, Duan B. Effects of tunable, 3D-bioprinted hydrogels on human brown adipocyte behavior and metabolic function. Acta Biomater. 2018 Apr 15; 71:486-495. doi: 10.1016/j.actbio.2018.03.021. Epub 2018 Mar 16. PMID: 29555462; PMCID: PMC6066177. 

Miller DR, Tzeng CC, Farmer T, Keller ET, Caplan S, Chen YS, Chen YL, Lin MF. Novel CIL-102 derivatives as potential therapeutic agents for docetaxel-resistant prostate cancer. Cancer Lett. 2018 Nov 1; 436:96-108. doi: 10.1016/j.canlet.2018.07.039. Epub 2018 Aug 3. PMID: 30077739; PMCID: PMC6278836. 

Ray A, Katoch P, Jain N, Mehta PP. Dileucine-like motifs in the C-terminal tail of connexin32 control its endocytosis and assembly into gap junctions. J Cell Sci. 2018 Mar 2;131(5): jcs207340. doi: 10.1242/jcs.207340. PMID: 29361528; PMCID: PMC5897717. 

Roy S, Bag AK, Dutta S, Polavaram NS, Islam R, Schellenburg S, Banwait J, Guda C, Ran S, Hollingsworth MA, Singh RK, Talmadge JE, Muders MH, Batra SK, Datta K. Macrophage-Derived Neuropilin-2 Exhibits Novel Tumor-Promoting Functions. Cancer Res. 2018 Oct 1;78(19):5600-5617. doi: 10.1158/0008-5472.CAN-18-0562. Epub 2018 Aug 15. PMID: 30111533; PMCID: PMC6168405. 

Wang F, Zhu S, Fisher LA, Wang W, Oakley GG, Li C, Peng A. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Sci Rep. 2018 Feb 8;8(1):2683. doi: 10.1038/s41598-018-21040-6. PMID: 29422626; PMCID: PMC5805732. 

Thomas MB, Gnanadhas DP, Dash PK, Machhi J, Lin Z, McMillan J, Edagwa B, Gelbard H, Gendelman HE, Gorantla S. Modulating cellular autophagy for controlled antiretroviral drug release. Nanomedicine (Lond). 2018 Sep;13(17):2139-2154. doi: 10.2217/nnm-2018-0224. Epub 2018 Aug 21. PMID: 30129397; PMCID: PMC6219451. 

Xie S, Reinecke JB, Farmer T, Bahl K, Yeow I, Nichols BJ, McLamarrah TA, Naslavsky N, Rogers GC, Caplan S. Vesicular trafficking plays a role in centriole disengagement and duplication. Mol Biol Cell. 2018 Nov 1;29(22):2622-2631. doi: 10.1091/mbc.E18-04-0241. Epub 2018 Sep 6. PMID: 30188792; PMCID: PMC6249839. 

Wiest EJ, Smith HJ, Hollingsworth MA. Met receptor inhibitor SU11274 localizes in the endoplasmic reticulum. Biochem Biophys Res Commun. 2018 Jul 2;501(4):858-862. doi: 10.1016/j.bbrc.2018.05.034. Epub 2018 May 19. PMID: 29752941.