Tahir Tahirov, PhD
Warren and Agnes Ritchie Professor in Cancer Research
Professor, UNMC Eppley Institute for Research in Cancer and Allied Diseases
Full member, Fred & Pamela Buffett Cancer Center
Research focus: Structural biology, DNA replication, transcription, biophysics, biochemistry
Research
The Tahirov laboratory focuses on the structural and mechanistic understanding of human DNA replication and transcription complexes. Key breakthroughs include resolving the structure of the regulatory subunits of DNA polymerase δ and revealing a conserved fold across B-family polymerases. This led to the discovery of a polymerase switch mechanism between Pol δ and Pol ζ, mediated by shared accessory subunits.
We introduced a novel direction examining macromolecular coordination at the replication fork. Central to this is our hypothesis that the p58C subunit of primase coordinates RNA-DNA primer synthesis and handoff to Pol δ and ε. To probe this, we developed a method to synthesize native-like chimeric RNA-DNA primers with 5′-triphosphates. These primers showed altered binding kinetics, polymerase fidelity, and enabled stabilization of elongation complexes for Cryo-EM studies—culminating in the structure of a primosome elongation complex with a 12-mer primer.
Challenging field norms, we conducted binding and kinetic studies at physiological salt concentrations. This approach revealed increased substrate specificity, dNTP-dependence, and processivity differences, especially for Pol α, whose fidelity we found to depend on the RNA/DNA primer ratio.
In our transcription study, we explored the structural basis of cooperative DNA binding by oncogenic transcription factors. Structures of complexes involving Runx1, Ets1, CBFβ, c-Myb, and C/EBPβ revealed mechanisms of transcription activation and how oncogenic mutations disrupt them.
The lab determined the crystal structure of HIV Tat bound to P-TEFb, a major elongation factor hijacked by viruses. A higher-order structure including AFF4 further illuminated transcriptional activation in viral contexts.
Our work provides a high-resolution structural framework for understanding genome replication and gene regulation, offering potential therapeutic targets for cancer and viral infections.
Current Lab Members
- Andrey Baranovskiy, Research Associate Professor
- Nigar Babayeva, Research Technologist I
- Lucia Morstadt, Research Technologist I
For information on student rotation opportunities please contact Dr. Tahirov at ttahirov@unmc.edu
Trainee Outcomes
- Yoshiaki Suwa, Postdoctoral Research Associate, now Associate Professor, School of Science and Technology, Kwansei Gakuin University, Japan
- Tripti Shrivastava, Postdoctoral Research Associate, now Scientist, Translational Health Science and Technology Institute, Haryana, India
- Jianyou Gu, Postdoctoral Research Associate, now Associate Professor, Institute of Hematology, The First Affiliated Hospital of Zhejiang Chinese Medical University.
- Vinod Agarkar, Postdoctoral Research Associate, now Director and Co-Founder, GeNext Genomics
- Koshiki Mino, Postdoctoral Research Associate, now Researcher, RIKEN, Japan.
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M.S., Metallophysics, Kiev Polytechnic Institute, Ukraine, 1984
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Ph.D., Physical Chemistry, Rostov State University, Russia, 1989
Research Areas:
- Mechanisms of human DNA replication
- Mechanisms of herpesviruses DNA replication
- Structural studies of virus-host interactions
- Structure-based design of antiviral and anticancer drugs
Techniques and Training:
- X-ray crystallography of macromolecules
- Cryo-electron microscopy (cryo-EM) of macromolecules
- Characterization of protein–protein, protein–nucleic acid, and protein–ligand (including inhibitor) interactions
- Kinetic studies of protein activity
Collaborations:
- Pavlov, Shcherbakova, PhD (UNMC Eppley Institute for Research in Cancer and Allied Diseases)
- Ci Ji Lim, PhD (University of Wisconsin–Madison)
- David Price, PhD (University of Iowa)
- Structural Basis of Herpesvirus Helicase-Primase Inhibition by Pritelivir and Amenamevir. bioRxiv [Preprint], 2025 May 15. 15:2025.05.15.654119. PMCID: PMC12132391.
https://www.biorxiv.org/content/10.1101/2025.05.15.654119 - The human primosome requires replication protein A when copying DNA with inverted repeats. Nucleic Acids Research, 2025, 53:gkaf799. (2025). PMCID: PMC12362254.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12362254/ - Structures of human primosome elongation complexes. Nature Structural & Molecular Biology, 2023, 30:579–583. PMCID: PMC10268227
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10268227/
Appointments:
- 2016–present: Coordinator, Chromatin Structural Biology Research, Eppley Institute
- 2016–present: Warren and Agnes Ritchie Professor in Cancer Research
Honors & Awards:
- 2010: UNMC Distinguished Scientist Award
- 2008: UNMC New Investigator Award
- 2007: Gordon Bell Prize – “A 281 Tflops Calculation for X-ray Protein Structure Analysis with the Special-Purpose Computer MDGRAPE-3”
- 2004: Biophysical Society Honorary Member
- 1996: Institute for Protein Research, Osaka University, Center of Excellence Postdoctoral Fellowship Award
Grants:
- NIH R35GM152032: DNA Replication Machines: Structure-Function Studies
University of Nebraska Medical Center
986805 Nebraska Medical Center
Omaha, NE 68198-6805