Recent Publications

Wipfler K, Cornish A, Guda C. (2018) Comparative molecular characterization of typical and exceptional responders in Glioblastoma Oncotarget (In press)

Cserhati M, Mooter ME, Peterson L, Wicks B, Pauley M and Guda C. (2018) Motifome comparison between modern human, Neanderthal and Denisova. BMC Genomics (In press)

Luan H, Mohapatra B, Bielecki T, Mushtaq I, Mirza S, Bailey T, Clubb R, An W, Ahmed D, Ansari R, Storck M, Mishra NK, Guda C, Sheinin Y, Meza J, Raja S, Rakha E, Band V, Band H.  (2018) Loss of the nuclear pool of ubiquitin ligase CHIP/STUB1 in breast cancer unleashes the MZF1-cathepsin pro-oncogenic program.  Cancer Research doi: 10.1158/0008-5472.CAN-16-2140. [PubMed]

Lopez W, Page AM, Carlson DJ, Ericson BL, Cserhati MF, Guda C, Carlson KA. (2018) Analysis of immune-related genes during Nora virus infection of Drosophila melanogaster using next-generation sequencing. AIMS Microbiology, 4:123-139. [PubMed]

Talbott H, Hou X, Qiu F, Zhang P, Guda C, Yu F, Cushman RA, Wood JR, Wang C, Cupp AS, Davis JS. (2017) Early transcriptome responses of the bovine midcycle corpus luteum to prostaglandin F2α includes cytokine signaling. Molecular and Cellular Endocrinology, doi: 10.1016/j.mce.2017.05.018 [PubMed]

Negi SK, Guda C. (2017) Global gene expression profiling of healthy human brain and its application in studying neurological disorders, Scientific Reports, 7:897 [PubMed]

Li Y, Heavican TB, Vellichirammal NN, Iqbad J, Guda C. (2017) ChimeRScope: a novel alignment-free algorithm for fusion gene prediction using paired-end RNA-Seq data, Nucleic Acids Researchdoi: 10.1093/nar/gkx315. [PubMed]

Mishra NK, Guda C. (2017) Integrative analysis of genome-wide methylation and expression in pancreatic adenocarcinoma. Oncotarget, 8:28990-29012. [PubMed]

Massilamany C, Nandakumar R, Madayiputhiya, Pandey S, Guda C, Reddy J. (2017) Gender-differences in the expression of proteins in autoreactive T cells specific to central nervous system myelin proteolipid protein. Journal of Autoimmune Disorders. (In press)

Wang X, Guda C.
Integrative Exploration of Genomic Profiles for Triple Negative Breast Cancer Identifies Potential Drug Targets.
Medicine (Baltimore). (2016) Jul;95(30):e4321. [PubMed].

Vural S, Wang X, Guda C.
Classification of breast cancer patients using somatic mutation profiles and machine learning approaches. 
BMC Systems Biology (2016) Aug 26;10 Suppl 3:62. [PubMed]

Massilamany C, Mohammed A, Loy JD, Purvis T, Krishnan B, Basavalingappa RH, Kelley CM, Guda C, Barletta RG, Moriyama EN, Smith TPL, Reddy J.  
Genome sequence analysis and characterization of Bacillus infantis NRRL B-14911 that can induce myocarditis in A/J mice. 
BMC Genomics. (2016) Aug 22;17 Suppl 7:511. [PubMed]

Stauch KL, Villeneuve LM, Purnell, PR, Pandey S, Guda C, and Fox HS.
Genetic ablation of the Parkinson’s disease-related proteins, PINK1, DJ-1, and Parkin, result in common synaptic mitochondrial alterations in the striatum early during disease progression. 

Cserhati MPandey S, Beaudoin J J, Baccaglini, L, Guda C, Fox H S. (2015) The National NeuroAIDS Tissue Consortium (NNTC) Database: an integrated database for HIV-related studies. Database [PubMed].

Shen R, Wang, X, Guda C. Mining functional subgraphs from cancer protein-protein interaction networks. BioMed Research International 6(Suppl 3): S2. [PMC]

Lakshmanan I, Seshacharyulu P, Haridas D, Rachagani S, Gupta S, Joshi S, Guda C, Jain M, Ganti AK, Ponnusamy, MP and Batra, SK. (2015) Novel HER3/MUC4 oncogenic signaling aggravates the tumorigenic phenotypes of pancreatic cancer cells. Oncotarget [PubMed].

Li Y, Wang X, Vural S, Cowan KH, Guda C.  (2015) Exome analysis reveals differentially mutated gene signatures of stage, grade and subtype in breast cancers. PLoS ONE, 10(3):e0119383 [PubMed].

Mohammed A, Guda C. (2015) Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism. BMC Genomics [PubMed].

Cornish A, Guda C. (2015) A comparison of variant calling pipelines using Genome-in-a-Bottle as a reference. BioMed Research International. [PubMed]

Negi S, Pandey S, Srinivasan SM, Mohammed A, Guda C. (2015) LocSigDB: A database of experimental and predicted protein localization signals. Database. [PubMed]