| The Department of Genetics, Cell Biology, and Anatomy |
| Center for Clinical and Translational Research & Great Plains Health Research Consortium |
| Bioinformatics and Molecular Modeling Core Facility |
| DNA Microarray Core Facility |
| The Proteomics Core in the Department of Pharmacology and Experimental Neuroscience |
| The University of Nebraska Next Generation Sequencing (NGS) Core Facility |
| The University of Nebraska High-Throughput DNA Sequencing and Genotyping Core Facility |
| The Core Electron Microscopy Research Facility |
| Mouse Genome Engineering Core Facility |
| Virtual Microscopy and Imaging Core Facility |
| BLAST |
Alignment |
The Basic Local Alignment Search Tool [42] is a similarity search tool. It is used to compare two sequences or search a sequence against a database of sequences. It starts by finding short matches between two sequences and attempts to find the local alignments from the initial matches. Thus, it does not guarantee optimal alignment, so some sequence hits may be missed. |
| EMBOSS |
Software Suite |
EMBOSS is "The European Molecular Biology Open Software Suite". It is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open-source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages |
| Clustal Omega |
Alignment |
ClustalW is a general-purpose multiple sequence alignment program for DNA or proteins. |
| DNA Structure - Animated Tutorial |
| Working with next-generation sequencing data |
| BioPerl |
BioPerl is a collection of Perl modules developed for use in biological research. |
| BioJava |
BioJava is an open-source project built in Java to facilitate rapid application development in bioinformatics. It provides different routines and parsers for processing biological data. |
| BioPython |
BioPython is open-source framework developed in python for biological application development. |
| Ensembl |
Ensembl is a joint project between EMBL - EBI and the Wellcome Trust Sanger Institute to develop a software system that produces and maintains automatic annotation on selected eukaryotic genomes. |
| Galaxy |
Galaxy is a collection of data analysis tools for biological data sets. |
| NCBI |
National Center for Biotechnology Information |
| Bioinformatics.org |
Bioinformatics Organization. |
| EMBL-EBI |
European Molecular Biology Laboratory - European Bioinformatics Institute |
| BIOSCI/Bionet |
It is a set of electronic communication forums for biological scientists. |
| Bioinformatics.org |
Bioinformatics Organization. |
| Bioinformatics |
This journal publishes scientific papers and review articles in the field of bioinformatics. |
| BMC Bioinformatics |
It is an open-access journal publishing an original peer-reviewed research articles in all aspects of the development, testing, and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. |
| Briefings in Bioinformatics |
An international forum for researchers and educators in the life sciences. The journal publishes reviews for the users of databases and analytical tools of contemporary genetics and molecular biology. |
