Publications
2021
125) Veerappa A, Pendyala G, Guda C.
A systems omics-based approach to decode substance use disorders and neuroadaptations.
Neuroscience and Biobehavioral Reviews, (2021) (In press)
124) Kim SK, Vishweswaraiah S, Macknis J, Yilmaz A, Lalwani A, Mishra NK, Guda C, Ogunyemi D, Radhakrishan U, Bahado-Singh RO.
New-onset postpartum preeclampsia: Epigenetic mechanism and prediction.
Journal of Maternal-Fetal & Neonatal Medicine, (2021) doi:10.1080/14767058.2021.1946504 [PubMed]
123) Radhakrishna U, Nath SK, Vishweswaraiah S, Uppala LV, Forray A, Muvvala SB, Mishra NK, Siddesh S, Guda C, Govindamangalam H, Vargas D, Gardella WG, Crist RC, Berrettini WH, Metpally RP, Bahado-Singh RO.
Maternal opioid use disorder: Placental transcriptome analysis for neonatal opioid withdrawal syndrome.
Genomics, (2021) doi:10.1016/j.ygeno.2021.08.001 [PubMed]
122) Schissel M, Best R, Liesemeyer S, Tan Y, Avuthu N, Carlson DJ, Shaffer JJ, Guda C, Carlson KA.
Effect of Nora virus infection on native gut bacterial communities and lifespan of Drosophila melanogaster.
AIMS Microbiology, (2021) doi:10.3934/microbiol.2021014 [PubMed]
121) Shakyawar S, Sethi S, Southekal S, Mishra NK, Guda C.
Big data analytics for modelling COVID-19 and comorbidities: An unmet need.
In Computational Intelligence Techniques for Combating COVID-19, Springer Book Chapter, (Eds. Kautish S, Peng S, Obaid A.), (2021) pp.185-201.
120) Rao C, Frodyma DE, Southekal S, Svoboda RA, Guda C, Johnson KR, Fisher KW, Lewis RE.
KSR1- and ERK-dependent Translational Regulation of the Epithelial-to-Mesenchymal Transition.
eLife, (2021) 10:e66608 [PubMed]
119) Hua G, George JW, Clark KL, Southekal S, Guda C, Hou X, Blum HR, Eudy J, Butnev VY, Brown AR, Katta S, May JV, Bousfield GR, Davis JS.
Hypo-glycosylated hFSH drives ovarian follicular development more efficiently than fully glycosylated hFSH: enhanced transcription and PI3K and MAPK signaling.
Human Reproduction, (2021) (in press)
118) Saleem I, Mirza S, Sarkar A, Raza M, Mohapatra B, Mushtaq I, Kim JH, Mishra NK, Alsaleem M, Rakha EA, Qiu F, Guda C, Band H, Band V.
The mammalian ecdysoneless protein interacts with RNA helicase DDX39A to regulate nuclear mRNA export.
Molecular Cell Biology, (2021) MCB.00103-21 [PubMed]
117) Shakyawar SK, Pandey S, Harvey DJ, Bousfield G, Guda C.
FGDB: Database of follicle stimulating hormone glycans.
Comput Struct Biotechnol J., (2021) 19:1635-1640 [PubMed]
116) Southekal S, Mishra NK, Guda C.
Pan-cancer analysis of human kinome gene expression and promoter DNA methylation identifies prognostic biomarkers in multiple cancers.
Cancers, (2021) 13:1189 [PubMed]
115) Uppala R, Vishweswaraiah S, Uppala LV, Crist RC, Mishra NK, Macknis J, Szymanska M, Kumar S, Aydas B, Forray A, Guda C, Carey DJ, Metpally RP, Berrettini WH, Bahado-Singh.
Placental DNA methylation in opioid-exposed pregnancies and associations with the neonatal opioid withdrawal syndrome.
Genomics, (2021) 113:1127-35 [PubMed]
114) Moore R, Puniya BL, Powers R, Guda C, Bayles K, Berkowitz D, Helikar T.
Integrative network analyses of transcriptomics data reveal potential drug targets for acute radiation syndrome.
Scientific Reports, (2021) 11:5585 [PubMed]
113) Vellichirammal NN, Guda C.
A compiled dataset of molecular pathways associated with fusion genes identified in pediatric cancers.
Data in Brief, (2021) 35:106780 [PubMed]
112) Sagar S, Rathinavel AK, Lutz WE, Struble LR, Khurana S, Schnaubelt AT, Mishra NK, Guda C, Broadhurst MK, Reid SPM, Bayles KW, Borgstahl GEO and Radhakrishnan P.
Bromelain inhibits SARS-CoV-2 infection via targeting ACE-2 and spike protein.
Clinical and Translational Medicine, (2021) 11(2):e281 [PubMed]
111) Gaurav R, Mikuls TR, Thiele GM, Nelson AJ, Niu M, Guda C, Eudy JD, Barry A, Romberger AJ, Duryee MJ, England BR, Poole JA.
High-throughput analysis of lung immune cells in a murine model of rheumatoid arthritis-associated lung disease.
PLOS ONE, (2021) 16(2):e0240707 [PubMed]
110) Odegaard KE, Schaal VL, Clark AR, Koul S, Jagadesan S, Xia Z, Mellon M, Uberti M, Liu Y, Stothert A, Van Hook M, Wang H, Guda C, Lisco SJ, Pendyala G, Yelamanchili S.
A holistic systems approach to characterize the impact of pre- and post-natal oxycodone exposure on neurodevelopment and behavior.
Frontiers in Cell and Developmental Biology, (2021) 8:619199 [PubMed]
2020
109) Wu S, Kumar V, Xiao P, Kuss M, Lim JY, Guda C, Butcher J, Duan B.
Age related extracellular matrix and interstitial cell phenotype in pulmonary valves.
Scientific Reports, (2020) 10(1):21338 [PubMed]
108) Jagadeesan S, Ahmad R, Avuthu N, Singh AP, Guda C.
Gut Microbiota and Metabolic Specificity in Ulcerative Colitis and Crohn’s Disease.
Frontiers in Medicine, Gastroenterology, (2020) 7:606298 [PubMed]
107) Vellichirammal NN, Chaturvedi N, Joshi SS, Coulter DW, Guda C
Fusion genes as biomarkers in pediatric cancers: A review of the current state and applicability in diagnostics and personalized therapy.
Cancer Letters, (2020) 499:24-38 [PubMed]
106) Shakyawar S, Sethi S, Southekal S, Mishra NK, Guda C.
Big data analytics for modelling COVID-19 and comorbidities: An unmet need.
In Computational Intelligence Techniques for Combating COVID-19, Springer Book Chapter, (Eds. Kautish S, Peng S, Obaid A.) (2020) (Accepted)
105) Odegaard KE, Schaal VL, Clark AR, Koul S, Gowen A, Jagadesan S, Xiao P, Guda C, Lisco SJ, Yelamanchili S, Pendyala G.
Characterization of the intergenerational impact of in utero and postnatal oxycodone exposure.
Translational Psychiatry, (2020) 10(1):329 [PubMed]
104) Mishra NK, Meng N, Guda C.
Identification of prognostic markers in cholangiocarcinoma using altered DNA methylation and gene expression profiles.
Frontiers in Genetics, (2020) 11:522125 [PedMed]
103) Cornish A, Roychoudhury S, Sarma K, Pramanik S, Bhakat K, Dudley A, Guda C.
Red Panda: a novel method for detecting variants in single-cell RNA sequencing.
BMC Genomics Supplement, (2020) 21(Suppl 11):830 [PubMed]
102) Chand S, Jo A, Vellichirammal NN, Gowen A, Guda C, Schaal V, Odegaard K, Lee H, Pendyala G, Yelamanchili S
Comprehensive characterization of organ-specific extracellular vesicle protein markers: Implications for preclinical and clinical applications.
ACS Applied Nano Materials, (2020) 3(9):8906-8919 [PubMed]
101) Koul S, Schaal VL, Chand S, Pittenger ST, Vellichirammal NN, Guda C, Bevins RA, Yelamanchili SV, Pendyala G
Role of brain derived extracellular vesicles in decoding sex differences associated with nicotine self-administration.
Cells, (2020) 9(8):1883 [PubMed]
100) Gao L, Kumar V, Vellichirammal NN, Park SY, Rudebush TL, Yu L, Son WM, Pekas EJ, Wafi AM, Hong J, Xiao P, Guda C, Wang HJ, Schultz HD, Zucker IH.
Functional, Proteomic, and Bioinformatic Analyses of Nrf2- and Keap1- Null Skeletal Muscle.
Journal of Physiology, (2020) 598(23):5427-5451 [PubMed]
99) Mishra NK, Southekal S, Guda C
Prognostic value of biomarkers in the tumor microenvironment of pancreatic ductal adenocarcinoma.
Annals of Translational Medicine, (2020) 8(10):615 [PubMed]
98) Tan Y, Xiao P, Guda C
In-depth Mendelian randomization analysis of causal factors for coronary artery disease.
Scientific Reports, (2020) 10(1):9208. [PubMed]
97) Kumar SRP, Wang X, Avuthu N, Bertolini TB, Terhorst C, Guda C, Daniell H, Herzog RW.
Role of small intestine and gut microbiome in plant-based oral tolerance for hemophilia.
Frontiers in Immunology, (2020) 11:844. [PubMed]
96) Zhang W, Klinkebiel D, Barger CJ, Pandey S, Guda C, Miller A, Akers S, Odunsi K, Karpf AR
Global DNA hypomethylation in epithelial ovarian cancer: passive demethylation and association with genomic instability.
Cancers, (2020) 12(3):764. [PubMed]
95) Bahado-Singh R, Vishweswaraiah S, Veerappa AM, Aydas B, Yilmaz A, Saiyed NM, Mishra NK, Guda C, Radhakrishna U.
Precision Cardiovascular Medicine: Artificial Intelligence and Epigenetics for the Pathogenesis and Prediction of Coarctation in Neonates.
Journal of Maternal-Fetal & Neonatal Medicine, (2020) doi:10.1080/14767058.2020.1722995 [PubMed]
94) Vellichirammal NN, Albahrani A, Banwait JK, Mishra NK, Li Y, Roychoudhury S, King MJ, Mirza S, Bhakat KK, Band V, Joshi SS, Guda C
Pan-cancer analysis reveals the diverse landscape of novel sense and antisense fusion transcripts.
Molecular Therapy Nucleic Acids, (2020) 19:1379-1398. [PubMed]
93) Tom E, Mushtaq I, Mohapatra B, Luan H, Zutshi N, Bhat A, Goetz B, Arya P, Bielecki T, Iseka F, Bhattacharyya S, Cypher L, Negi S, Storck M, Rana S, Barnekow A, Singh P, Ying G, Guda C, Natarajan A, V Band, H Band.
EHD1 and RUSC2 Control Basal EGFR Cell Surface Expression and Recycling.
Molecular and Cellular Biology, (2020) 40(7):e00434-19. [PubMed]
92) Jang HS, Noh MR, Jung EM, Kim WY, Guda C, Foster KW, Oupicky D, Ferrer FA, Padanilam BJ.
Proximal tubule cyclophilin D regulates fatty acid oxidation in cisplatin-induced acute kidney injury.
Kidney International, (2020) doi:10.1016/j.kint.2019.08.019. [PubMed]
91) Vellichirammal NN, Albahrani A, Li Y, Guda C
Identification of fusion transcripts from unaligned RNA-seq reads using ChimeRScope.
Methods in Molecular Biology, (2020) doi:10.1007/978-1-4939-9904-0_2. [PubMed]